Bpph

Record added by Jurg Ott (the original Rockefeller list)

Berkeley method for Perfect Phylogeney Haplotyping

April 2003

a program for inferring haplotypes from genotypes to determine if there are resulting haplotypes that fit a tree model (i.e. a perfect phylogeny, a coalescent). In population genetic terms, BPPH determines whether a set of SNP genotypes can be explained by haplotype pairs that could have evolved on a coalescent under the no-recombination, infinite sites model.

• Ren-Hua Chuang
• Dan Gusfield (UC Davis) (email: gusfield@cs.ucdavis.edu)

http://wwwcsif.cs.ucdavis.edu/~gusfield/bpph.html

D. Gusfield (2002), “Haplotyping as perfect phylogeny: conceptual framework and efficient solutions”, In Proceedings of RECOMB, Sixth Annual Conference on Research in Computational Molecular Biology, pp.?-?.