Htr

Record added by Jurg Ott (the original Rockefeller list)

Haplotype Trend Regression

Aug 2002

Haplotype association mapping using unrelated individuals; “fixed” and “sliding” window analysis; overall tests and tests for individual haplotype effects

Dmitri Zaykin

• http://statgen.ncsu.edu/zaykin/htr.html
• ftp://statgen.ncsu.edu/pub/zaykin/htr/

C++, Bash shell

Window, UNIX(Solaris)

emgi.exe (fixed number of markers), bash emgi.sh (sliding window)

Zaykin DV, Westfall PH, Young SS, Karnoub MC, Wagner MJ, Ehm MG (2002), “Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals”, Human Heredity, 53:79-91.