Ldselect

LDSELECT

Record added by Jurg Ott (the original Rockefeller list)

Version

1.0

Description

The program analyzes patterns of linkage disequilibrium (LD) between polymorphic sites in a locus, and bins the SNPs on the basis of a threshold level of LD as measured by r2.

Author

Deborah A. Nickerson
Mark Rieder
Chris Carlson
Qian Yi (Univ of Washington)

URL

http://droog.gs.washington.edu/ldSelect.html

Reference

Carlson, Eberle, Rieder, Yi, Kruglyak, Nickerson (2004), “Selecting a maximally informative set of single-nucleotide polymorphisms for association analysis using linkage disequilibrium”, American Journal of Human Genetics, 74(1):106-120